umap.hpp

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/*
 * Copyright (c) 2019-2023, NVIDIA CORPORATION.
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
 
#pragma once
 
#include <raft/sparse/coo.hpp>
 
#include <cstddef>
#include <cstdint>
#include <cuml/manifold/umapparams.h>
#include <memory>
 
namespace raft {
class handle_t;
}  // namespace raft
 
namespace ML {
class UMAPParams;
namespace UMAP {
 
void find_ab(const raft::handle_t& handle, UMAPParams* params);
 
std::unique_ptr<raft::sparse::COO<float, int>> get_graph(const raft::handle_t& handle,
                                                         float* X,  // input matrix
                                                         float* y,  // labels
                                                         int n,
                                                         int d,
                                                         int64_t* knn_indices,
                                                         float* knn_dists,
                                                         UMAPParams* params);
 
void refine(const raft::handle_t& handle,
            float* X,
            int n,
            int d,
            raft::sparse::COO<float, int>* graph,
            UMAPParams* params,
            float* embeddings);
 
void fit(const raft::handle_t& handle,
         float* X,
         float* y,
         int n,
         int d,
         int64_t* knn_indices,
         float* knn_dists,
         UMAPParams* params,
         float* embeddings,
         raft::sparse::COO<float, int>* graph);
 
void fit_sparse(const raft::handle_t& handle,
                int* indptr,
                int* indices,
                float* data,
                size_t nnz,
                float* y,
                int n,
                int d,
                int* knn_indices,
                float* knn_dists,
                UMAPParams* params,
                float* embeddings,
                raft::sparse::COO<float, int>* graph);
 
void transform(const raft::handle_t& handle,
               float* X,
               int n,
               int d,
               float* orig_X,
               int orig_n,
               float* embedding,
               int embedding_n,
               UMAPParams* params,
               float* transformed);
 
void transform_sparse(const raft::handle_t& handle,
                      int* indptr,
                      int* indices,
                      float* data,
                      size_t nnz,
                      int n,
                      int d,
                      int* orig_x_indptr,
                      int* orig_x_indices,
                      float* orig_x_data,
                      size_t orig_nnz,
                      int orig_n,
                      float* embedding,
                      int embedding_n,
                      UMAPParams* params,
                      float* transformed);
 
}  // namespace UMAP
}  // namespace ML